Lotus japonicus Handbook
A.J.Márquez; J.Stougaard; M.Udvardi; M.Parniske; H.Spaink; G.Saalbach; J.Webb; M.Chiurazzi (Eds.) 2005, XXI, 384 p.

Hardcover published by Springer, The Netherlands
ISBN: 978-1-4020-3734-4  
 

Front Cover                                       List of editors                               Preface

                           1. LOTUS JAPONICUS, A GENERAL INTRODUCTION

                                 J. STOUGAARD AND A.J. MÁRQUEZ. 

 1.1 E. Pajuelo and J. Stougaard. Lotus japonicus as a model system
1.2 P. Díaz, O. Borsani, and J. Monza. Lotus-related species and their agronomic importance
1.3 P. Díaz, J. Monza, and A.J. Márquez. Drought and saline stress

2. SYMBIOTIC PROCESSES                                   

M. UDVARDI AND M. PARNISKE.                                             

2.1 E. M. Hayashi, M.L. Tansengco, N. Suganuma, K. Szczyglowski, L. Krusell, T. Ott, and M. Udvardi. Methods for studying nodule development and function
2.2 A. Barbulova and M. Chiurazzi. A procedure for in vitro nodulation studies
2.3 S. Kosuta, T. Winzer, and M. Parniske. Arbuscular mycorrhiza

   

3. CELL AND MOLECULAR BIOLOGY PROTOCOLS

H.P. SPAINK AND M. PARNISKE.

3.1 C. Díaz, H.R.M. Schlaman, and H.P. Spaink. Concurrent visualization of gusA and lacZ reporter gene expression

3.2 M. Grønlund, A. Agalou, M.C. Rubio, G.E.M. Lamers, A. Roussis, and H.P. Spaink. Embedding root and nodule tissue in plastic (BMM)

3.3 C. Kistner and M. Matamoros. RNA isolation using phase extraction and LiCl precipitation

3.4 T. Ott, L. Krussell, and M. Udvardi. RNA isolation using CsCl gradients

3.5 J. Perry and M. Parniske. 96-well DNA isolation method

4. FUNCTIONAL GENOMICS

 M. UDVARDI AND G. SAALBACH

 

4.1 S. Tabata. Genome structural analysis

4.2 T. Ott, L. Krusell, S. Freund, and M. Udvardi. Transcriptome analysis using cDNA arrays

4.3 S. Kloska, P. Krüger, and J. Selbig. Lotus japonicus expression database

4.4 G. Saalbach. Procedures for mass spectrometric proteome analysis

4.5 S. Wienkoop. Isolation of peribacteroid membranes for proteome analysis

4.6 G. Debrosses, D. Steinhauser, J. Kopka, and M. Udvardi. Metabolome analysis using GC-MS

   

5. Mutants, gene-tagging, and genetic analysis

J. Stougaard and K.J.Webb

5.1  K.J. Webb, M. Robbins, T.L. Wang, M. Parniske, and A.J. Márquez. Mutagenesis 

5.2 E. Pajuelo . A mutant catalogue of Lotus japonicus

5.3 J. Perry, T. Welham, S. Cheminant, M. Parniske, and T. Wang. TILLING

5.4 L. Tirichine, J.A. Herrera-Cervera, and J. Stougaard. Ds gene tagging 

5.5 N. Sandal, K. Krause, M. Frantescu, S. Radutoiu, L. Krusell, L.H. Madsen, N. Kanamori, E. Madsen, L. Tirichine, and J. Stougaard. Mapping and map-based cloning

5.6 L. Schauser, S. Subrahmanyam, L.H. Madsen, N. Sandal, and J. Stougaard. An in silico strategy using comparative sequence analysis

5.7 L.H. Madsen and J. Stougaard. Information transfer: mapping and cloning in other legumes

6. Transformation and reverse genetic analysis

M. Chiurazzi

6.1 P. Lombari, E. Ercolano, H. El Alaoui, and M. Chiurazzi. Agrobacterium-mediated in vitro transformation
6.2 C.L. Diaz, M. Gronlund, H.R.M. Schlaman, and H.P. Spaink. Induction of hairy roots for symbiotic gene expression studies
6.3 L. Tirichine, J.A. Herrera, and J. Stougaard. Transformation-regeneration procedure
6.4 S. Radutoiu, L.H. Madsen, E.B. Madsen, and J. Stougaard. Agrobacterium rhizogenes pRi TL-DNA integration system
6.5 S.U. Andersen, C. Cvitanich, M. Gronlund, H. Busk, D.B. Jensen, and E.O. Jensen. Vectors for reverse genetics and expression analysis
 

   

7. PRIMARY AND SECONDARY METABOLISM

A.J. MARQUEZ AND K.J. WEBB

7.1 A. Orea, P. Pajuelo, J.M. Romero, and A.J. Márquez. Nitrate assimilation: Influence of nitrogen supply
7.2 A.J. Márquez, M. Betti, M. García-Calderón, G. Estivill, A. Credali, P. Pajuelo, A.Orea, M.T. Clemente, E. Pajuelo, F. Galván. Nitrate and ammonium assimilatory enzymes
7.3 A. Orea, I. Prosser, J.M. Romero, and A.J. Márquez. Transgenic plants affected in nitrate assimilation
7.4 N. Rispail, R. Nash, and K.J. Webb. Secondary metabolite profiling
7.5 N. Rispail, P. Morris, and K.J. Webb. Phenolic compounds: extraction and analysis
7.6 A. Lanot and P. Morris. Elicitation of isoflavan phytoalexins
 

8. LOTUS JAPONICUS LITERATURE
M. BETTI AND A.J. MARQUEZ

8.1 M. Betti and A.J. Márquez. An update of work published on Lotus japonicus
 

Colour plates

Acknoldgements:

 

Bridging Genomics and Agrosystem Management: Resources for Adaptation and Sustainable Production of Forage Lotus Species in Environmentally-Constrained SouthAmerican Soils
 
       

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